Benchmark-Models-PEtab
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Benchmarking-Initiative
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
See: https://github.com/PEtab-dev/PEtab/issues/309
This will be helpful for others who want to add PEtab support to their tools to have appropriate test cases. Features would include, e.g.: - Parameterized condition table - Replicate...
This issue serves as an overview of which models already have the visualization file. During the work on each model this model's issue should be re-opened. Once all models have...
Should cover how to suggest / add new models, minimum information, error reporting, agreement to license terms, ...
From the paper _Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells_, Korkut et al. eLife 2015;4:e04640, huge parameter space, many conditions good model for testing maybe...
https://www.embopress.org/doi/full/10.15252/msb.20167258
https://www.sciencedirect.com/science/article/abs/pii/S0098135418305714
https://link.springer.com/protocol/10.1007%2F978-1-61779-833-7_6
https://www.nature.com/articles/s41467-018-04720-9
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A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling