systems-biology topic

Curated (meta)list of resources for Biology.

raivivek

COBRApy is a package for constraint-based modeling of metabolic networks.

opencobra

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

pybel

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

SciML

PANDORA - Predictive Analytics aNd Data Oriented Research Applications :computer:

genular

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, p...

sorgerlab

Python framework for Systems Biology modeling

pysb

python Parameter EStimation TOolbox

ICB-DCM

The consensus GEM for Saccharomyces cerevisiae

SysBioChalmers

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

copasi