Automatic generation of general information file

[JanHasenauer]

[dweindl]

What exactly is needed here?

[dweindl]

Is anybody working on this? What is planned there? Would be super helpful if that was machine readable...

[dweindl]

Reported likelihoods, for reference:

Bachmann_MSB2011    -478.459689232875
Becker_Science2010    -364.118614198023
Beer_MolBioSystems2014    None
Boehm_JProteomeRes2014    276.443999412412
Borghans_BiophysChem1997    -192.199126507458
Brannmark_JBC2010    283.778227541074
Bruno_JExpBio2016    None
Chen_MSB2009    231400.283327288
Crauste_CellSystems2017    None
Elowitz_Nature2000    -140.865189742162
Fiedler_BMC2016    -117.16780323362
Fujita_SciSignal2010    -106.184513153884
Hass_PONE2017    None
Isensee_JCB2018    7950.84181339651
Lucarelli_CellSystems2018    91.8885069265334
Merkle_PCB2016    -1388.59682706751
Raia_CancerResearch2011    690.619495552297
Schwen_PONE2014    -86.2457701165108
Sneyd_PNAS2002    -639.319770327168
Sobotta_Frontiers2017    -1346.75391686389
Swameye_PNAS2003    -142.118024712038
Weber_BMC2015    592.403584529373
Zheng_PNAS2012    -556.667170104739

[LeonardSchmiester]

Do we still want to have this? What would be included in the general info file? LLH / xi2 values?

[JanHasenauer]

Not sure if this is still necessary as we have now the yaml file. however, it would be really good to have somewhere the reference to the original information.

[dweindl]

however, it would be really good to have somewhere the reference to the original information.

You mean the original publication? That should already be stated in the SBML model afaik.