metage2metabo

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mpwt could not find the version of Pathway Tools

1

I have this error message: `######### Running metabolic network reconstruction with Pathway Tools ######### Remove genomes temporary datas. mpwt could not find the version of Pathway Tools. It is possibly...

Choaro

Non optimal powergraph visualisation

2

We have observed in several experiments that the visualisation offered by the powergraph does not reflect exactly the combinatorics of the solution. This seems to be normal as powergrasp uses...

ArnaudBelcour

gff file format problem while running m2m recon

1

Hello, I have a problem running the following command : `m2m recon -g rocks -o rocks_m2m -c 16` Here is the error message : ``` ######### Running metabolic network reconstruction...

gpchoupichou

By default m2m_analysis creates powergrasp config file then deletes it. But this will cause issue when launching multiple runs of m2m_analysis at the same time (the same file being manipulated...

ArnaudBelcour

A better focus on the host metabolism when a host is provided

1

Currently, providing a host will not impact the first part of m2m which is the calculation of individual scopes for bacterial members of the community. We want the host to...

cfrioux

To add more details on the metabolic networks used we could compute the deadend and the orphan metabolites for both individual and community. For individual organism we could use [menetools...

ArnaudBelcour

M2M workflow and mincom

1

Hi, I have been working with m2m to do some microbial community metabolic interaction analysis and I have stumble with and issue. When trying to run the mincom minimal_community.mincom() function...

ggmirandac