M2M workflow and mincom

[ggmirandac]

Hi,

I have been working with m2m to do some microbial community metabolic interaction analysis and I have stumble with and issue. When trying to run the mincom minimal_community.mincom() function of the python API the target the mincom.json is often empty in the fields that are not the producible metabolites.

I am wondering if this is because of the way that the target.sbml file is created (I am using the main_seeds() function of m2m.main).

Otherwise, in the m2m workflow the optional argumen -t can be left empty and the addvalue metabolites are used. Is there a way to do the same with the python API?

Looking forward for your answer.