George Pimm
George Pimm
Certainly sounds like a sensible approach to me
Hello @pre-mRNA , Have you installed the osx pkg installer: https://github.com/nanoporetech/vbz_compression/releases/download/v1.0.1/ont-vbz-hdf-plugin-1.0.1-Darwin.pkg ? Does the HdfView tool work to open a standard multifast5 file with the above installed?
Hi @xcarmengrandix , To assist with your issue we would need more information. What OS ae you running? and can you read the hdf files using a tool like hdfview...
> I installed hdfview and I cannot see any hdf file in the path of the plugin You would not find an hdf file in the path of the plugin...
If you dont have a fast5 file to open, then the vbz plugin cannot be failing - what data/process are you trying to execute? what does it consume as input?...
Hi @BlkPingu , Have you tried on multiple input datasets, or only one? I'll give it a go now with some input data I have locally. - George
Right @BlkPingu , It does all seem to work as expected on my end, I converted ~10GB of data through the script and it didnt crash. Is it possible there...
Hi @BlkPingu , It was on an `Apple M1 Max` with 32 GB of memory. I did notice the script using > 40GB of memory while running - which was...
Hi @vetmohit89 , You’re trying to install a deb there using conda. You need to install the deb using apt. - George
Hi @aedavids, the wheel is built for python 3.9 - you seem to be using 3.6. You could build a wheel for your curreny python setup, or upgrade python to...