Bulk fast5 recompression on MacOS

[pre-mRNA]

Hello,

I am having several issues working with VBZ-compressed bulk fast5 files on MacOS.

1. Instructions to install the vbz plugin on MacOS are extremely poorly documented.

2. The ont_fast5_api is advertised as a tool to manipulate fast5s, but doesn't work to recompress bulk fast5 file. However, this isn't stated anywhere in the documentation, further adding to the confusion.

3. My specific issue, after managing to install the vbz_compression plugin:

I am working with bulk fast5 files on MacOS, and trying to recompress from VBZ to GZIP so I can analyse the files using my own pipelines.

The command I am using is:

h5repack -f GZIP=1 input.fast5 output.fast5

This returns the following errors:

Warning: dataset <#dataset> cannot be read, user defined filter is not available

Thus, I am unable to recompress the files.

Any help would be appreciated - thanks in advance.