George Pimm
George Pimm
Hello, Do you know the origin of the files? If there is an original uncorrupt source you could copy from there? Thanks, - George
Yes, from the messages posted I believe there is a problem with the files themselves - I cant be too sure what has happened though, sorry. - George
Hi @nickpro9 , Its not an error I'm familiar with. Have you confirmed the fast5 files you are using are valid? Could they have become truncated or corrupt when moving...
Can you confirm if you are running the commands in a working directory that is nfs mounted? Thanks, - George
Can you test running the command in an non-nfs working directory, and can you also confirm the version of pod5 you are running is definitely 0.3.34? Thanks, - George
Based on the error i suspect the file is uncompressed (and hitting an unaccounted for error)... I'm not sure how its possible to end up with an uncompressed file -...
Ok, I'm not familiar with how Icarust writes pod5 files, but I've completed investigating in the pod5 source and found it is due to a bug with uncompressed pod5 files...
Sequencing runs on the current MinKNOW software do not set the pore type no
I'm in the process of deploying 0.3.12, which contains a fix for the issue of opening raw data from uncompressed pod5 files. Thanks, - George
Hi @arturotorreso, Just to confirm - you tested writing two files simultaneously, and confirmed it wasn't a bottleneck of writing to one file. _but_ you did see increased performance when...