Quentin Blampey

Thanks @atharva-bhagwat for sharing this - it seems that your baysor installation itself is wrong. Could you maybe check in the Baysor if there is any related error? If not,...

I had the same issue and came out with the same fix (before seing this PR...) I quickly checked the seaborn versions, and `plot_factors_violin` works only with `seaborn=0.13.0` anyway, so...

Hello @reJELIN, What's the output of the COMET? Do you know where I can find any existing COMET datasets online? Depending on the data format: - if the data is...

Oh, okay, so it's multimodal, you also have transcripts. In that case, we'll need a dedicated reader. The .ome.tif image is perfect, but how are the transcripts stored? We would...

Hi @Sophielsn, Thanks for your comment - this is inspired by [this Tangram internal function](https://github.com/broadinstitute/Tangram/blob/master/tangram/plot_utils.py#L163), and based on [this discussion](https://github.com/broadinstitute/Tangram/issues/96) Based on experimentation, it seems to be more robust than...

Hi @LauritzMia, Sorry for the delay, and thanks for your positive comment on the package! No, sorry, the `feature_slice.h5` file is mandatory, as it contains some metadata, e.g. to extract...

It seems to be an issue related to Dask. To confirm that, can you try to simply create a Dask Client: ```python from dask.distributed import Client client = Client() ```...

Oh okay so it fails when closing the Client (it was actually in the logs...) so can you try this: ```python from dask.distributed import Client client = Client() client.close() ```

Okay, last check: the code below runs some "dummy functions" (still outside of Sopa). Can it now reproduce the error? Since the error comes when the Dask Client is closing,...

Okay thanks for trying. Do you confirm this issue is specific to windows? Do you have root permissions on your machine?