Quentin Blampey

Thanks for trying! So, now, my hypothesis is either (1) the `detected_transcripts.csv` file itself has some issue, or (2) dask dataframe reads it wrong. To test these: 1. Can you...

When checking for nan values, can you use `data.isna().any(axis=1).mean()`? This will give you the ratio of rows that contains at least one NaN value. This should be 0 on MERSCOPE...

> The only true count being the column names. Do you mean that the only row with NaN values are the columns? The command `data.isna().any(axis=1).mean()` shouldn't count the columns. Are...

Hi @marsdenl, do you also have access to a Linux or MacOS machine by any chance? If yes, do you have the same issue? I think it may be a...

Hi @marsdenl, thanks for trying out! It's good to know that it works on MacOS for you. I'll re-open the issue though, because other Windows users may want to have...

Thanks @marsdenl for your very detailed comment! It's not the first time I hear good things about proseg. Indeed, if it's highly dependent on a good prior, it could be...

Hi @lguerard, Okay, good to know that it's fast! What about the RAM? Do you know if it's memory-heavy? Since it can be run on its own, I guess the...

Great, thanks!

Hi @lguerard, sorry to hear this issue is still happening... I still have never experienced it, although I have run multiple pipelines. Could you please send me a `pip list`...

Hi @bkinnersley, I think the natural way to do that is to use the `norm` argument from [`render_images`](https://spatialdata.scverse.org/projects/plot/en/stable/plotting.html) (make sure to have the latest version of `spatialdata-plot`). Notably, you can...