Quentin Blampey

Thanks, @LisaSikkema; I figured it out shortly after I sent my message. For now, I only have these solutions, but I don't like any of them: - Filtering this warning....

Hello @VPetukhov, do you have any update on this? I'm also running on very large images (about 1000M transcripts per image), and, as said above, the slicing workaround creates artifacts....

Hello @VPetukhov, thanks for your answer, I'm very excited to try the new release! To answer your question: actually we have a software dedicated to visualisation, so I'm not using...

Thanks for the update and the release @VPetukhov, I'll try that out!

Hello @VPetukhov, I recently released a pipeline (https://github.com/gustaveroussy/sopa) for all mage-based spatial-omics, whose segmentation can be based on Baysor It is very memory efficient, and scales to large datasets (see...

Hello @rusty1s, I also have issues installing `torch_scatter` with poetry (for the reason you mentioned), but I don't like using the wheels since I need to specify a cpu or...

Thanks @rusty1s for your answer! I checked again why I was depending on `torch-scatter`, and it was because of [`AttentionalAggregation`](https://pytorch-geometric.readthedocs.io/en/latest/generated/torch_geometric.nn.aggr.AttentionalAggregation.html#torch_geometric.nn.aggr.AttentionalAggregation). When providing `ptr` as an input, I get the error...

Oh I wanted to make a pull request for this, but I just shown this open PR (https://github.com/theislab/scgen/pull/77) that tries to solve this

Okay thanks for your answer!

Hello @EST09, Thanks for your interest in Sopa. I have a few questions to ensure I understand correctly what you want to do: 1. The overall result should be one...