Quentin Blampey

Hello @guoyang-github, This feature actually already exists: there is a parameter called `expand_radius_ratio` in the [aggregation](https://gustaveroussy.github.io/sopa/api/segmentation/aggregate/#sopa.segmentation.aggregation.Aggregator.compute_table). This way, it will expand the cell before counting the transcripts or averaging the...

Yes, true, this would be better. I note this as a feature request, and I'll work on this!

Hi @guoyang-github, it should be added soon: all I need is shapely==2.1.0 to be released, which will add a new feature which I need

I added a `no_overlap: bool` argument when performing the radius expansion, which will be available in the next release, although still experimental. You can already test this using the`main` branch...

Great! This feature will also be in the next release. But it's still experimental, so I'll be happy to have your feedback!

This is now available in `sopa==2.1.0`, see [here the `no_overlap` parameter](https://gustaveroussy.github.io/sopa/api/aggregation/#sopa.aggregate)

Hi @LucaMarconato, have you started working on your last comment? If not, do you want me to have a look (although I'm not exactly sure to understand what you want...

I noticed we are missing a feature: after we save a SpatialData object, if we add a new attr, there is currently no way to save it on disk. Something...

I also noticed that we want to pass the `attrs` inside certain functions, e.g. when performing a query (the `attrs` should be kept). I made a commit for this The...

Hi @atharva-bhagwat, Since you received this warning, I assume you are using the `force=True` argument? Context: It's possible that Baysor fails on some patches due to a low number of...