Quentin Blampey

Nice! Do you think it would be easy/possible to add some tests for it and for all backends?

I added type hints and also made the test less symmetrical: is it normal to now have an error due to that? I wanted to extract a non-squared region `ValueError:...

Thanks @stergioc, I think we're almost there! I added some tests and made some minor updates (I let you have a look if you want). Last round of questions and...

Thanks Stergios for all your answers! I'll have a deeper look tomorrow, but I think I'll be able to easily fix the CI and merge the PR!

Thanks @stergioc, it's now merged! Btw, since you have write permissions, you can directly create a new branch from the official repository next time 🙂

Hello @KunHHE, after running Sopa on Visium HD you'll have information at the single-cell resolution, so every spatial operation will work at the cell level just like for any other...

Hello @marsdenl, thanks for reporting this weird issue. I have never seen this before. Could you share an example of a transcript.csv file that failed (together with the corresponding `config.toml`...

Indeed I think the problem is happening when creating the `transcripts.csv` file. We do that using dask, which process each partition in parallel. Maybe, at some points, two processes try...

Alright, thanks for the details. Can you also let me know if this happens on the toy dataset (`--technology uniform`)? I'm trying to reproduce the issue

Can you try to make smaller patches using `--patch-width-microns`? You can choose any value that creates more than 1 patch