Quentin Blampey

Thanks for providing these details! I confirm that this can be done with Sopa, but it requires combining a few different functions from the [API](https://gustaveroussy.github.io/sopa/api/segmentation/aggregate/#sopa.segmentation.aggregate.Aggregator) I'll add a new function...

Hello @EST09, I think it's because at least one of your shapes is a `MultiPolygon`, while I expect to have only `Polygon`. This probably happened during your overlay, which can...

Hello @EST09, just wanted to let you know that I released `sopa==1.0.11`, which contains this feature. You can read the documentation of this function [here](https://gustaveroussy.github.io/sopa/api/segmentation/aggregate/#sopa.segmentation.aggregate.overlay_segmentation). Concerning the Explorer update, you...

Hello @EST09, is everything working as expected? Should I close the issue?

Hi, Indeed it's weird to have a different transcript count. Just to make sure I understand what you did: you tried the two aproaches below, right? 1. Add the shapes...

I'm closing this issue, but feel free to re-open if you need extra information!

Hello @cstrlln, In this [section of the doc](https://gustaveroussy.github.io/sopa/api/io/#sopa.io.cosmx) you'll find details about which files are needed for CosMX data. Note that `path` is the path to the directory containing all...

Thanks @cstrlln, let me know how it goes! Meanwhile, I will also try to find an export module that has the intended file format

Thanks @cstrlln for your interest in Sopa 🙂 Indeed BIDCell is quite similar to Baysor, but I don't know much about Bering. Actually, I was already thinking about including BIDCell...

Actually, we were testing proseg yesterday! It gave good results on our first test, and we will conduct additionnal tests. It looks promising, so it's likely to be added inside...