nipype

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### Summary The `ants.ConvertScalarImageToRGB` wraps the cmdline tool `ConvertScalarImageToRGB`, which takes mainly positional arguments. Some of the positional arguments are optional, such as the `mask file,` so to omit the...

ChristianHinge

BET interface produces wrong and in_file and command which fails silently without an error

1

I have implemented a BET node in my workflow as I wish to use the binary brain mask for intensity normalization. ``` _bet = fsl.BET() _bet.inputs.mask = True _bet.inputs.out_file =...

ChristianHinge

NIPYPE Matlab issue

1

### Summary Anytime I do anything related to SPM I have this error showing along with the typical Matlab beep sound error: `stty: 'standard input': Inappropriate ioctl for device` ###...

Brainarea

### Summary The `iflogger` in `nipype.interfaces.c3` is None, resulting in errors like this: ``` File "/home/user/.local/lib/python3.6/site-packages/nipype/interfaces/c3.py", line 229, in _gen_outfile iflogger.info("Generating `out_file`.") AttributeError: 'NoneType' object has no attribute 'info' ```...

reghbali

ANTS antsMotionCorr implementation

4

### Summary Are there plans to implement antsMotionCorr [1] in niypyes ants package? [2]. I would be happy to help with this using one of the other ants commands as...

JoeZiminski

How to get output in .csv file?

1

I am trying to use python to read .nii files. But I want to store the output in a .csv file where all the details are stored. Can someone let...

ayushiiijoshi

No command "fslstats" or "fslmaths" on host

1

### Summary New to nipype and running the following script ### Actual behavior This is the error I get when I run ``` /home/shree/.local/lib/python3.6/site-packages/niflow/nipype1/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed warnings.warn('cmp not...

teku45

Hi, I'm very new to Nipype, and I require to use the AFNI interface in my script from my Mac OS laptop. I have installed AFNI folder in my laptop...

leehweeling

ENH: Add three new workbench command interfaces

4

I added the following interfaces for workbench - [x] wb_command -cifti-correlation - [x] wb_command -cifti-parcellate - [x] wb_command -cifti-separate

a3sha2

Having an issue loading the vdm file into spm. The single vdm file is not getting auto-populated { } for spm batch to read the vdm in the jobfile. Therefore,...

sboard1