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Workflows and interfaces for neuroimaging packages
While starting #3378, checking whether we can smoothly upgrade to the latest neurodocker and neurodebian.
### Summary I cannot find the camino_to_trackvis binary in either the camino or trackvis modules. Also, I don't see any documentation for it.
### Summary Hi, I’ve been setting up a fairly straightforward 1st level analysis pipeline for my fmriprepped data, but struggling a lot now with an error that I can’t figure...
### Summary Script raises "Exceptions", which is not defined ### Actual behavior NameError: name 'Exceptions' is not defined ### Expected behavior should raise "Exception" ### How to replicate the behavior...
Great work from the team. Moving forward, I would like to link nipype with Matlab. Specifically, the objective is to submit some argument from Python through nipype to a Matlab...
The great thing about Nipype is that we can easily switch between different interfaces. For my fMRI workflows I often switch between FSL and SPM routines and from time to...
### Summary I’ m using NiPype through a Singularity image made with Neurodocker. I have successfully used other SPM preprocessing functions but the Normalize12 is crashing. ### Code used ```...
### Summary I am not able to create workflows for nipype objects that as an input that in_channel instead of in_files. However, if the SPM function takes an in_files the...
When running the [tutorial](https://github.com/neuropycon/graphpype/blob/master/examples/plot_conmat_to_graph.py), the compiler return the following error ``` RuntimeError: Workflow did not execute cleanly. Check log for details 210818-01:18:44,747 nipype.workflow INFO: *********************************** 210818-01:18:44,748 nipype.workflow ERROR: could not...
### Summary Somewhat of a minor issue, but the side bar for the [documentation website](https://nipype.readthedocs.io/en/latest/index.html) is not interactive (i.e., the search bar doesn't work, and the links are not clickable)....
