nipype
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nipy
Workflows and interfaces for neuroimaging packages
### Summary I generate a model from a bids event file. The events are named li, limr, re, remr ### Actual behavior In the bunch file the event li is...
### Summary When using `nipype.algorithms.modelgen.SpecifySPMModel`, the respective node-folder contains empty files (0 KB) and therefore raises an `traits.trait_errors.TraitError` ### Actual behavior I set up a workflow using the HCP dataset,...
Hello, I'm trying to plot the results of deconvolution of 4D series (through Afni interface). But instead of getting a 3D coeff. matrix I get 5D matrix. Can you please...
### Summary This issue relates to a potentially missing functionality. I am using the FSL interface in Nipype for fMRI analysis and having a hard time creating a feat design...
### Summary This issue is possibly related to #3301. All problems discussed there were bypassed by tweaking the script so that it doesn't produce the error anymore (specifically, it was...
I am interested in using nipype to set up my analysis pipeline and datalad, especially datalad run for provenance tracking (and version control). However, I’m not sure about how to...
In the documentation of [SpecifyModel](https://nipype.readthedocs.io/en/doc-make-examples-2/api/generated/nipype.algorithms.modelgen.html#specifymodel) there are some markdown typos for the **Mandatory Input** `bids_event_file`: > *onset*, \`duration`, and categorization and amplitude columns The respective docstring can be found [here](https://github.com/nipy/nipype/blob/54f50294064c081f866b10085f6e6486e3fe2620/nipype/algorithms/modelgen.py#L241-L242)...
### Summary ANTs2.3.5 `ComposeMultiTransform` function takes the following format `ComposeMultiTransform Dimension outwarp.nii -R template.nii ExistingWarp.nii ExistingAffine.nii`. `nipype.interfaces.ants.ComposeMultiTransform` omits the `-R` before the `tempalte.nii` where `template.nii` is specified with `compose_transform.inputs.reference_image =...
### Summary Currently running on a cluster inside a compute node however it is desired to run on more than 1 node at the same time. ### Information How can...
### Summary I'm using mrtrix3 in order to try to sample an MR image. In my connect statements, I use mrtrix3.Tractography() with the 'seed_grid_voxel' option. This option requires a tuple...
