nipype
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nipy
Workflows and interfaces for neuroimaging packages
## Summary Disable some rules and postpone fixes. Requires #3689.
### Summary I'm walking through miykael's tutorial and found the output of mcflirt could not be correctly recognized: ``` FileNotFoundError: No such file or directory '/xxx/working_dir/preprocWF/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_mcf_mean_reg.nii.gz' for output 'mean_img' of...
### Summary In the [documentation](https://nipype.readthedocs.io/en/latest/api/generated/nipype.interfaces.spm.model.html#threshold) for the Threshold method within the nipype SPM interface it shows use_vox_fdr_correction as an optional input with description "Whether to use voxel-based FDR correction for...
FSL cluster will print the default table of found clusters into stdout. However, in the Nipype interface this basic (and important) table is not amongst the outputs of the interface....
### Summary When using `fsl.FNIRT` you have to set `fieldcoeff_file=True` in the inputs even when the `fieldcoeff_file` output is connected to a downstream node. ### Actual behavior No `fieldcoeff_file` is...
I am trying to update some fsl interfaces to implement support for gpu multiproc queue (#3722 #3721) and I plan to implement interfaces for some new freesuerfer cuda capable commands...
## Summary Fixes #2918 ## List of changes proposed in this PR (pull-request) - changed the command line string used to call the BRAINSresample utility that is included in 3D...
### Summary Actually there are two issues caused by the same problem: 1. issue: When using a mask image for SPM level1design and also changing the input "spm_mat_dir" the Level1Design...
Add support for this: `-w : write behavior for name conflicts (0,1,2, default 2: 0=skip duplicates, 1=overwrite, 2=add suffix)`