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VDM phase_map loading error realign unwarp

Open sboard1 opened this issue 4 years ago • 0 comments
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Having an issue loading the vdm file into spm. The single vdm file is not getting auto-populated { } for spm batch to read the vdm in the jobfile. Therefore, the vdm file is not being used in reference for realign and unwarping.

code: realignUnwarp.inputs.phase_map = 'file'

Actual behavior

jobs{1}.spm.spatial.realignunwarp.data.pmscan = 'file';

Expected behavior

jobs{1}.spm.spatial.realignunwarp.data.pmscan = {'file'};

  • spm 12 batch editor needs these brackets to read the file

I suspect this may just be a version issue, with the Nipype code and version I'm running working with SPM8 and now that I'm running SPM12 the file is not being read in properly.

sboard1 avatar May 28 '21 15:05 sboard1