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NIPYPE Matlab issue

Open Brainarea opened this issue 4 years ago • 1 comments

Summary

Anytime I do anything related to SPM I have this error showing along with the typical Matlab beep sound error:

stty: 'standard input': Inappropriate ioctl for device

Expected behavior

No error message

How to replicate the behavior

I'm using a Singularity image made with Neurodocker with: -Debian:stretch -SPM12 r7771 -Matlab compiler R2010 (MCR)

Script/Workflow details

matlab_cmd = '/opt/spm12-r7771/run_spm12.sh /opt/matlabmcr-2010a/v713/ script'
spm.SPMCommand.set_mlab_paths(matlab_cmd=matlab_cmd, use_mcr=True)

Error message re-appear anytime I do anything SPM related. Although it does not seem to crash or prevent computation.

Brainarea avatar Jul 30 '21 01:07 Brainarea

this is an issue with the script used to call matlab not on the end of nipype I believe. If you google the error you will find a ton of stuff come up

TonnarCastellano avatar Jul 31 '21 00:07 TonnarCastellano