C. Titus Brown

Note that the issue in #3137 might also apply to the code in `linear.rs`, so we should double check that when implementing the stats.

thanks for reporting, @replikation! I did: ``` grep GCF_002966675.1 gtdb-rs214.lineages.csv ``` and it does indeed have a species designation; ``` GCF_002966675.1,f,d__Bacteria,p__Pseudomonadota,c__Gammaproteobacteria,o__Enterobacterales_A,f__Pasteurellaceae,g__Haemophilus,s__Haemophilus influenzae ``` I am wondering if maybe the k-mers...

I don't immediately know if https://github.com/sourmash-bio/sourmash/pull/3387 is related, but something I've been thinking about more is doing downsampling on the `Record`, and then `sig_from_record` will downsample as it loads.

WOW. This is fascinating. I can replicate, and it is in fact all the way down in the Rust layer: ```python import sourmash x = sourmash.load_signatures('results/sourmash_signatures/genome.sig', do_raise=True) list(x) ``` I...

A fork (for the short term) might make the most sense here. If there's long term interest in maintaining and releasing then we can discuss details of how to turn...

> 🤯 I didn't realize just how much of khmer might be deprecated in favor of sourmash! I mean, it's not 1:1 by any means - they have a lot...

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1082721#10

You could also take a look through mailing archives to estimate hostility quotients and the like for discussions, because that turns off new contributors (including women) and sets the tone...

Hi @ezherman I have nothing but intuition to offer, I'm afraid! Hopefully some others will step up with some better experience! > I am in the process of determining whether...

Just a quick follow-up - on re-reading the above, I wanted to make it clear: unknown/non-matching k-mers are not a problem for sourmash. They are just ignored, except in some...