C. Titus Brown

hi @gabridinosauro we have some new code that makes it easy to sketch all genomes under any given NCBI taxonomic rank; it's not particularly usable by others yet, but I...

@gabridinosauro updated reference databases described here: https://github.com/sourmash-bio/sourmash/issues/3504

sourmash plot could certainly use some love! It was one of the first things we implemented ~6 years ago, and (FBFW) has driven a lot of our citations... but we...

additional thoughts - * can easily make binders with R and Python scripts/notebooks that show loading & viz code and permit further customization * also at the very least we...

more from slack: >Christopher Gulvik [Fig 1c](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120633/) minimum spanning tree style in GrapeTree rocks by [@jcarrico] and [@happykhan] . I've grown to appreciate it more and more for a broader...

The [`betterplot` plugin](https://github.com/sourmash-bio/sourmash_plugin_betterplot/) would be a good place to add custom plotting code for very large plots.

I'm interested, but only available in 3 weeks (first week of August).

There should be relatively few places in the codebase where we use `load_signatures_from_json` directly - the API I would suggest using is `load_file_as_signatures`, which handles many more signature formats and...

thanks @mr-eyes! I love the idea! One thing here is that the current arrays collapse duplicates (while counting multiplicity) so this would have to be a whole separate array. I...

additional thought - this would primarily be useful for reference genomes, not for shotgun sequence. although I could see it being useful for long reads! more more thought - there's...