C. Titus Brown

icon indicating a website link http://ivory.idyll.org/blog/ icon indicating an email [email protected]

icon company University of California, Davis icon location Davis, CA icon location Prof at UC Davis. Blogs at http://ivory.idyll.org/blog/ and uses bluesky under ctitusbrown.

Results 979 comments of C. Titus Brown
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`sourmash sig describe` can't process large signatures.

Yep - and in fact, the whole `_HashesWrapper` area of things is a great target for oxidation 🦀 , with potentially far-reaching speed and memory improvements! This might be something...

`sourmash sig describe` can't process large signatures.

also kind of related: https://github.com/sourmash-bio/sourmash/issues/2898

`sourmash sig describe` can't process large signatures.

(Yes, the relevant calculations are being moved into rust in #2943.)

GTDB release 9 - RS220 - databases

we're working on it! The only really trick part is naming the sketches. @bluegenes or maybe @ccbaumler could probably point you at the right code more easily than me; otherwise...

GTDB release 9 - RS220 - databases

databases available here: https://github.com/sourmash-bio/sourmash/issues/3246

trouble with custom database index

hi @jorondo1! I'm wondering if you created the index using a (much) older version of the branchwater plugin that didn't store the sketches internally by default? If you use the...

Create script to extract intersections between sets from gather output

@taylorreiter what are you using these days?

Create script to extract intersections between sets from gather output

(could you post an example image? :)

Create script to extract intersections between sets from gather output

really nice, thanks taylor! here it is, inline -- ![upset_var_imp_genomes2](https://user-images.githubusercontent.com/51016/78996139-cee7d780-7af8-11ea-9936-90c6c1dde607.png)

Create script to extract intersections between sets from gather output

ref #1234