C. Titus Brown

aaaaactually this strikes me as an eminently doable thing for a new `sig` subcommand - basically something like `sourmash sig overlap` but for n signatures, not just two. could output...

adding the `upset` command via the betterplot plugin in https://github.com/sourmash-bio/sourmash_plugin_betterplot/pull/35 - it produces figures like this: 

hi @UniAlberta, you'll want to use the `--csv` output instead - the `.cmp` file is a numpy binary matrix file that is probably more difficult to read into R! Here's...

that's weird - what command did you use to install sourmash? In any case, after activating the conda environment, you should be able to use ``` pip install numpy ```...

Nope, no updates. And in any case that wouldn't have broken your conda environment! I'm wondering if maybe your conda environment activation is somehow messed up - try logging in...

fantastic! please feel free to ask for help here or elsewhere - more people monitor https://github.com/dib-lab/sourmash/issues so that's a good place to go :)

I suspect if you supply `--no-rebuild-manifest` things will go _much_ faster - see `sourmash sig manifest` help output, >The manifest will be rebuilt by iterating over the signatures in the...

`sig manifest` is probably the simplest way to do this. Ideally `sig describe --csv` would let you do this too, but it will be slow. You can also use `sig...

Sorry for taking so long to get back to this - ``` /usr/bin/time -v sourmash sig manifest --no-rebuild-manifest genbank-2022.03-viral-k21.zip -o /tmp/viral_manifest.txt ``` yields: ``` .... manifest contains 47951 signatures total....

looks like it should be updated! along with authorship stuff. we can maybe do this as part of whatever release includes the pyopensci / JOSS publication.