C. Titus Brown
C. Titus Brown
it's not hard to change the code in @taylorreiter Snakefile to output an abundance sig. I'll do that when I get a chance!
Check this 'un out - https://github.com/ctb/2022-sourmash-filter-min-samples
(some things to be done to improve, but it's a start!)
> That explanation helps a lot!! I'm trying to picture a use case for `inflate` and `flatten`. The goal to be able to add or take away abundance information to...
Note to self: `sourmash sig export` and `import` per https://github.com/sourmash-bio/sourmash/issues/1098 would help demonstrate/check/evaluate abundance stuff in signatures.
(Updated the git repo with comments and README.)
Thinking of integrating this into `sourmash sig` as either `commonhash` or `occurrences` - any thoughts?
so I was worried this would happen 😆 you should actually have one gigantic file containing many signatures! Try running `sourmash sig summarize `. You can use `sourmash sig split`...
(very evocative names...) you can actually do a lot of stuff with the frakensignature file, which is pretty snakemake friendly. Question is what you want to actually do :). note...
(I'm tempted to suggest we move this to a new issue, since it's diverging pretty far from the issue title - but we can do that later I guess ;)...