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--rangeList is not subsetting for skato

Open zx8754 opened this issue 5 years ago • 1 comments

Trying to run burden test on subset of vcf as below:

rvtest --inVcf ... \
--noweb \
--pheno ... \
--covar ... \
--rangeList 21:1-11500000 \ # <--- here
--geneFile refFlat_hg19.txt.gz \
--kernel skato \
--out ...

But the output keeps giving results for all the chromosomes and all the genes. Any idea why?

zx8754 avatar Sep 18 '18 10:09 zx8754

Looks like a bug. I will check that.

zhanxw avatar Dec 06 '18 06:12 zhanxw