Yasset Perez-Riverol

Thanks a lot for this plugin, Im rtying to push to my nexus (I can do it from local) but I got the following error ``` 2021-08-15T13:35:59.4638271Z [ERROR] Failed to...

The curl container is not working for https urls. Check the error. https://stackoverflow.com/questions/3160909/how-do-i-deal-with-certificates-using-curl-while-trying-to-access-an-https-url

I'm converting from obo to owl using the following command: ``` ./owltools pride_cv.obo -o pride_cv.owl ``` I'm receiving the following error at the end: Content is not allowed in prolog

Download the image of the ontology viz

4

@simonjupp The previous API had a functionality to been able to download the picture of the term relations as the web http://www.ebi.ac.uk/ols/beta/ontologies/aeo/terms/graph?iri=http://purl.obolibrary.org/obo/CARO_0000008&&ed=http://purl.obolibrary.org/obo/CARO_0000008&& This one was the entry point: http://www.ebi.ac.uk/ontology-lookup/serveImgFile.do?imgFileName= Do...

summary size

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Define the size of the summary. I would like to be able to define the size of all summary in the main page.

Index of pride ontology in OLS

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Hi @henrietteharmse : Can you make sure the new version of PRIDE Ontology vocabulary https://github.com/PRIDE-Utilities/pride-ontology/blob/master/pride_cv.obo get indexed. Regards Yasset

Tide support is not working properly when generating the compiler file with this example. [test.mgf.tide.txt](https://github.com/mpc-bioinformatics/pia/files/2823434/test.mgf.tide.txt)

Phosphorylation localisation score, fdr.

2

We need to include in PÍA a phosphorylation localización score and FDR . I see so far two popular scores A-score and PhosphoRS for the localisation score. I will provide...

Error in mzTab Parser reading the identification protocols affect the Generation of Compiler file

1

When merging to mztab, error reading Identification protocols.

PSM ms_run[] get repeated in mztab export.

4

For some reason PSM ms_run[] get repeated in mztab export. Here and exmaple: PSM FGIAAK 1 P21796 0 databaseName null [MS, MS:1002387, PIA, 1.3.10]|[PSI-MS, MS:1001476, X!Tandem, X! Tandem Alanine (2017.2.1.4)]|[PSI-MS,...