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Published 20 hours ago • verified publisher icon medbioinf

Phosphorylation localisation score, fdr.

Open ypriverol opened this issue 5 years ago • 2 comments

We need to include in PÍA a phosphorylation localización score and FDR . I see so far two popular scores A-score and PhosphoRS for the localisation score. I will provide some code.

ypriverol avatar Nov 01 '18 08:11 ypriverol

https://github.com/compomics/peptide-shaker/blob/23349246f7b1afd9bb6a9d026f280d14249e8c4e/src/main/java/eu/isas/peptideshaker/ptm/PtmScorer.java

ypriverol avatar Nov 01 '18 16:11 ypriverol

We will implement a different tool for protein phosphorylation annotation in mzIndetML and mzTab.

ypriverol avatar Jan 25 '19 10:01 ypriverol