deSALT
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ydLiu-HIT
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
Hello, I ran desalt index on the human genome primary assembly and then tried to run desalt align on the index route but I keep getting this error **File error:wrong...
Hello deSALT team: Follow the installation note, the command git clone hit an error, please advise. Thank you! $ git clone --recursive https://github.com/ydLiu-HIT/deSALT.git Cloning into 'deSALT'... remote: Enumerating objects: 1109,...
The following error messages appear after I ran deSALT aln: [Main] deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads [Param-INFO] deSALT parameters:index-kmer:22 seed-lmer:15 hash-kmer:8 thread:2 strand_diff:20 identify...
Hi I am running desalt2-1.5.4 on Ubuntu 18.04.6 LTS with 376G of RAM and 72 CPU cores with the following command `~/repos/deSALT-1.5.4/src/deSALT aln desalt_index 191023_m99.fastq.gz -t 48 -x ont1d -o...
Hi. I am using deSALT 1.5.6 to align PacBio SMRT CCS reads. I found deSALT added wrong strand information (XS:A:+/-) in result sam file. The strand information should indicate the...
Dear Sir, I tried to compile this tool locally in my server and downloaded the source code from version 1.5.6. The first error was that I had no permissions to...
Hi, ya dong: I use deSALT to align human ONT cDNA 1D reads to hg38 genome, but I find no supplementary alignments in the sam file. This is my command:...
When I indexed reference, it will erase all the information under the index route. It is crazy, I lost all the data. Can you fix the issue?
