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File error:wrong route or wrong file name

Open kimiasalek opened this issue 1 year ago • 0 comments

Hello,

I ran desalt index on the human genome primary assembly and then tried to run desalt align on the index route but I keep getting this error File error:wrong route or wrong file name, i am sure that the route and the names are correct, I even tried the deBGA in src folder but got the same error. this is important for my project can you please tell me what you think?

  • can I use this one https://github.com/HongzheGuo/deBGA ?

has finished 255 file loading

finish filling the hash blank

begin creating unipath: 268435456

number of supernode: 68329456

number of linear node: 2423572493

number of forward Y branch node: 13098895

number of reverse Y branch node: 13114949

number of X branch node: 12882307

number of linear blunt node: 408

number of branch blunt node: 0

number of end blunt node: 0

number of ends blunt node: 0

the max length of supernode: 9889

begin wrtting hash and kmer array and offset on unipath into file 2462669052

begin writing info about size of index files

Program finished

deleting div temporary index file folder

finish index building

[desalt_index] Done!

[Main] Real time: 7202.470 sec; CPU: 0.003 sec, Memory peak: 0.00 GB

Indexing is done

[Main] deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

[Param-INFO] deSALT parameters:index-kmer:22 seed-lmer:15 hash-kmer:8 thread:10 strand_diff:20 identify junction:both_strand

[Phase-INFO] Loading Index and Reads

File error:wrong route or wrong file name

here is the index folder:

total 37654061

-rw-r--r-- 1 ksalek gge 7336 Feb 12 12:30 N.sta

-rw-r--r-- 1 ksalek gge 781722504 Feb 12 12:30 ref.seq

-rw-r--r-- 1 ksalek gge 409 Feb 12 12:30 unipath.chr

-rw-r--r-- 1 ksalek gge 2147483656 Feb 12 13:43 unipath_g.hash

-rw-r--r-- 1 ksalek gge 9850676208 Feb 12 13:43 unipath_g.kmer

-rw-r--r-- 1 ksalek gge 19701352416 Feb 12 13:43 unipath_g.offset

-rw-r--r-- 1 ksalek gge 4008844976 Feb 12 14:12 unipath.pos

-rw-r--r-- 1 ksalek gge 546635656 Feb 12 14:12 unipath.posp

-rw-r--r-- 1 ksalek gge 974397440 Feb 12 14:12 unipath.seqb

-rw-r--r-- 1 ksalek gge 546635656 Feb 12 13:43 unipath.seqfb

-rw-r--r-- 1 ksalek gge 80 Feb 12 14:12 unipath.size

I am looking forward to your answer .

kimiasalek avatar Feb 13 '24 11:02 kimiasalek