deSALT
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File error:wrong route or wrong file name
Hello,
I ran desalt index on the human genome primary assembly and then tried to run desalt align on the index route but I keep getting this error File error:wrong route or wrong file name, i am sure that the route and the names are correct, I even tried the deBGA in src folder but got the same error. this is important for my project can you please tell me what you think?
- can I use this one https://github.com/HongzheGuo/deBGA ?
has finished 255 file loading
finish filling the hash blank
begin creating unipath: 268435456
number of supernode: 68329456
number of linear node: 2423572493
number of forward Y branch node: 13098895
number of reverse Y branch node: 13114949
number of X branch node: 12882307
number of linear blunt node: 408
number of branch blunt node: 0
number of end blunt node: 0
number of ends blunt node: 0
the max length of supernode: 9889
begin wrtting hash and kmer array and offset on unipath into file 2462669052
begin writing info about size of index files
Program finished
deleting div temporary index file folder
finish index building
[desalt_index] Done!
[Main] Real time: 7202.470 sec; CPU: 0.003 sec, Memory peak: 0.00 GB
Indexing is done
[Main] deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
[Param-INFO] deSALT parameters:index-kmer:22 seed-lmer:15 hash-kmer:8 thread:10 strand_diff:20 identify junction:both_strand
[Phase-INFO] Loading Index and Reads
File error:wrong route or wrong file name
here is the index folder:
total 37654061
-rw-r--r-- 1 ksalek gge 7336 Feb 12 12:30 N.sta
-rw-r--r-- 1 ksalek gge 781722504 Feb 12 12:30 ref.seq
-rw-r--r-- 1 ksalek gge 409 Feb 12 12:30 unipath.chr
-rw-r--r-- 1 ksalek gge 2147483656 Feb 12 13:43 unipath_g.hash
-rw-r--r-- 1 ksalek gge 9850676208 Feb 12 13:43 unipath_g.kmer
-rw-r--r-- 1 ksalek gge 19701352416 Feb 12 13:43 unipath_g.offset
-rw-r--r-- 1 ksalek gge 4008844976 Feb 12 14:12 unipath.pos
-rw-r--r-- 1 ksalek gge 546635656 Feb 12 14:12 unipath.posp
-rw-r--r-- 1 ksalek gge 974397440 Feb 12 14:12 unipath.seqb
-rw-r--r-- 1 ksalek gge 546635656 Feb 12 13:43 unipath.seqfb
-rw-r--r-- 1 ksalek gge 80 Feb 12 14:12 unipath.size
I am looking forward to your answer .