JHXu

Problem running emapper.py and download bact arch viruses

1

Dear authors: I encountered a problem running emapper.py when I used command as follow: emapper.py -i abc.fa -o k -m diamond --cpu 64 --dmnd_db /db/eggnog/ it turns out :Database bact...

problem about dramv-annotate

3

Hi developer, I met a lot of warmings when running dramv-annotate: it looks like: ``` 2024-03-07 09:45:29,681 - 1 fastas found 2024-03-07 09:45:29,681 - Checking for duplicate names 2024-03-07 09:45:29,817...

The role of cobra in classic virome pipeline

4

Hi Linxing: Thank you for developing this nice tool! I am curious about what's the functions does COBRA have in the classic virome pipeline as it's a new software. For...

geNomad taxonomy about Baltimore classification

1

Hi developer, I wonder whether geNomad can make Baltimore classification (DNA, dsDNA, ssDNA, ssDNA-RT, dsRNA, RNA, ssRNA, ssRNA-RT) for the viruses? Thank you!

Hi developer, thank you for this nice tool! I put 300 protein sequences into AF2, and some of them were run successfully, however some of them didn't get all output...

Hi developer, thank you for this nice tool! I want to know that can foldseek help us to know whether there are shared domain or conformation between our query and...