xiucz
xiucz
I am eager to test the new v3.1 version, because the DGV AF is important to filter CNVs.😊.
Thank you, I will feedback later.
Yes, the `Gene_name` column contains all the genes, but is it possible to categorize them into `cosmic gene`, `omim gene` ? Best, xiucz
@lgmgeo Thank you, these are precisely what I want, but which columns are often used to refer to this information? Best, xiucz
I think this issue is very important to me. When I deal with the CAP data (high capture cfDNA data), GATK4.1.0.8's performance is much better than GATK4.2 ...
Now , I think it is reasonable to filter in the VCF. But how about add the same `--show all` to the `cnvkit.py export vcf` commander line?
Hi, I can open the website via browser, but the command line gives warning, thus fail to use. ``` [_download_] warning: file not available: https://zhouserver.research.chop.edu/TransVar/annotations/hg19.knowngene.gz.transvardb.loc_idx or target directory not found...
Hi, @lgmgeo Thanks your reply. Okay, let's set DNAfusion aside and focus solely on SV. For variant types like INS, DEL, DUP, sorting them by coordinates seems to solve the...
> Because in my opinion, all the overlapped genes can be implied in a default of function (due to promoters, TAD... reorganisation). It is true. Is it possible to add...
Thank you! I have successfully tested it, and I will reopen it if I have any other questions.