How to get raw vcf without filtering CNV events?

Open xiucz opened this issue 3 years ago • 2 comments

Hi, @etal

How to get the raw vcf without filtering any lines using cnvkit.py export vcf?

Best, xiucz

Feb 24 '22 02:02 xiucz

It's not an option for VCF. But it is an option for BED format: cnvkit.py export bed --show all. Will that format work for your pipeline?

Mar 02 '22 03:03 etal

Now , I think it is reasonable to filter in the VCF. But how about add the same --show all to the cnvkit.py export vcf commander line?

Mar 23 '22 05:03 xiucz