xiucz

Hi, Thanks for your wonderful tool And when I want to plot from bed file with my wes data, it hung. Can you correct my gramma? ``` ~/ASCIIGenome-1.15.0/ASCIIGenome -ni \...

Hi, When I use the following command to check fastqs, however it returns the error. But without using pipe into fastp, it works well. May I get your opinion on...

-bash: ./tsv-pretty: cannot execute binary file

1

Hi, Thanks for your tool. When I use the lastest verison: tsv-utils-v2.2.1_osx-x86_64_ldc2 reports error. ``` -bash: ./tsv-pretty: cannot execute binary file ``` Best, xiucz

AnnotSV changed the start position in VCF?

1

Hi, When I use AnnotSV to annotate my SV file from Lumpy, I find the start positions were changed in the AnnotSV result. For example, `chr7:73743401-116381161` is the vcf file,...

How about to get more annotations?

5

Hi, For `omim database`, is it possible to get the `Omim Genes Symbol` column, `OMIM_ID /OMIM_phenotype / OMIM_inheritance / OMIM_morbid / OMIM_morbid_candidate` are already in the headers. For `ClinGene data`,...

Annotate SV_type column with inversion/deletion/duplication/insertion

1

Hi, Are you interested in reannotating SV_type column with `inversion/deletion/duplication/insertion`, not just `BND`? https://github.com/walaj/svaba/issues/4 Best, xiucz

DGV are no longer in the result

5

Hi, In the AnnotSV version 3.3, the DGV annotations are not in the result, how can I reobtain it ?  Thank you. Xiucz

- version GATK4.2.6.1 Hi, When I use the following command to genotype a single g vcf file, the output **alt depth**(ref depth is ok) in the FORMAT column are missing....

Support for fusion hgvs

6

Hi, Thanks for your great work. I have some fusion events, like ``` 1, Fusion: EML4_ENST00000318522.5:intron:6|-chr2:42493486___ALK_ENST00000389048.3:intron:19|+chr2:29447415 ``` How can I use this tool to translate it into hgvs format, something...

软件根目录在哪

3

您好， 软件根目录如下： ``` # which ssserver /usr/bin/ssserver ``` 还是`/etc/init.d/shadowsocks` 这个呢？