Xichen Wu
Xichen Wu
Hallo, i was running popscle demuxlet on the tutorial dataset, which detected 6 doublets. However, based on the .best file in the goole drive, the dataset has roughly 40 doublets....
Add popscle/dscpileup to module. This is used to pileup reads and corresponding base quality for each overlapping SNPs and each barcode. ## PR checklist Related to #5073 - [x] This...
Add single-cell demultiplexing tool demuxlet to module ## PR checklist Closes #5073 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug...
Hey, thanks for developing pydeseq2! I used to perform DGE analysis with edgeR and happy now to see there is a python package. I am comparing the result of pydeseq2...
Add recipe for blitzgsea Checklist - [x] Title of this PR is meaningful: e.g. "Adding my_nifty_package", not "updated meta.yaml". - [x] License file is packaged (see [here](https://github.com/conda-forge/staged-recipes/blob/5eddbd7fc9d1502169089da06c3688d9759be978/recipes/example/meta.yaml#L64-L73) for an example)....
Checklist - [x] Title of this PR is meaningful: e.g. "Adding my_nifty_package", not "updated meta.yaml". - [x] License file is packaged (see [here](https://github.com/conda-forge/staged-recipes/blob/5eddbd7fc9d1502169089da06c3688d9759be978/recipes/example/meta.yaml#L64-L73) for an example). - [x] Source is...
Add entrypoint to conda package. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a...
Describe your pull request here Add new recipe for Souporcell ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this...
Hi, I've been trying to get fhiry onto conda-forge using [grayskull](https://github.com/conda-incubator/grayskull) but it seems like the source distribution (sdist) for fhiry is missing on PyPI. So running `grayskull pypi fhiry`...
### Description of feature The docs need to be updated after an overhaul of API, especially new comparison metrics in - perturbation space - differential gene expression - distances