Xichen Wu
Xichen Wu
Hallo， I have met the same issue when I ran souporcell on the tutorial dataset of demuxlet on github with known genotype, either skipped or not skipped the remap step....
Thank you so much for the quick response! This would be helpful! I was struggling to have the same result.
Sorry but another question, can I ask which parameter has changed? I am thinking maybe the alpha value in this case.
Hi, did you figure out what caused the segmentation fault? I am also stuck with this error.
I also met this error, when will the new singularity build released?
> Thanks for the quick reply! Is there a way to explicitly skip that step in the pipeline or is that not recommended? Hey, I see you closed the issue....
> I am working on making a new singularity build with these issues fixed. But you might not need that step. That just estimates ambient RNA and calls final cluster...
@wheaton5 Is there any update to solve the issue? Thank you!
@bio-la do we keep the tables or remove them? here is the latest version https://github.com/theislab/hadge/blob/docs/docs/source/genetic.md So i copy the text at the beginning of the doc, followed by 2 tables...
@mari-ga Is there any update on the hashing part?