Add popscle/demuxlet to module

[wxicu]

Add single-cell demultiplexing tool demuxlet to module

PR checklist

Closes #5073

• [x] This comment contains a description of changes (with reason).
• [x] If you've fixed a bug or added code that should be tested, add tests!
• [x] If you've added a new tool - have you followed the module conventions in the contribution docs
• [x] If necessary, include test data in your PR.
• [x] Remove all TODO statements.
• [x] Emit the versions.yml file.
• [x] Follow the naming conventions.
• [x] Follow the parameters requirements.
• [x] Follow the input/output options guidelines.
• [x] Add a resource label
• [x] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • [ ] nf-core modules test <MODULE> --profile docker
    • [ ] nf-core modules test <MODULE> --profile singularity
    • [x] nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

[wxicu]

I believe this code does not belong here, it looks like a separate module that needs its own PR (I mean, the dsc-pileup code)

the dsc-pileup is required to provide the optional input for demuxlet. Is it better to make it separate from this PR?

[itrujnara]

I believe this code does not belong here, it looks like a separate module that needs its own PR (I mean, the dsc-pileup code)

the dsc-pileup is required to provide the optional input for demuxlet. Is it better to make it separate from this PR?

Even though it is referenced by this one, it's a module in its own right and I believe it should be processed separately (e.g. because it will be easier to review one module at a time). Can you please create a PR for pileup, and return to this one once it is approved? You can ping me for review on the new PR if you need

[wxicu]

sure, will do this

[itrujnara]

Hi, this is just to remind you that you can now finish this PR. Ping me once you've cleaned all the files here.