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Published 20 hours ago • verified publisher icon wurmlab

Dot plot.

Open yeban opened this issue 9 years ago • 2 comments

Dot plot is a great way to visualise local sequence similarity. There are several tools to generate dot-plot, but it might be worth writing something simple of our own using pairwise alignment generated by BLAST. Alternative might be to dump data in a format that can be imported into a popular dot plot generator. My inclination, though, is former with the visualisation embeded in our HTML results and the ability to download a publication quality PNG / SVG.

https://en.wikipedia.org/wiki/Dot_plot_(bioinformatics)

yeban avatar Mar 17 '16 05:03 yeban

@yannickwurm Maybe dot-plot is redundant with Kablammo?

/cc @vivekiitkgp

yeban avatar Mar 21 '16 06:03 yeban

no

On 21 Mar 2016, at 06:40, Anurag Priyam [email protected] wrote:

@yannickwurm I have been thinking, maybe dot-plot is redundant with Kablammo?

/cc @vivekiitkgp

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yannickwurm avatar Mar 21 '16 08:03 yannickwurm