varfish-server

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chore(main): release 0.1.0

2

:robot: I have created a release *beep* *boop* --- ## 0.1.0 (2024-05-16) ### Features * adapt filter frontend to case detail variant annotations ([#1104](https://github.com/varfish-org/varfish-server/issues/1104)) ([#1122](https://github.com/varfish-org/varfish-server/issues/1122)) ([ed0652a](https://github.com/varfish-org/varfish-server/commit/ed0652a32840e050f121ecf46160efca7f796e60)) * add a flag...

varfish-bot

**Is your feature request related to a problem? Please describe.** The `geneinfo` app isn't used much anymore, expect for resolving gene panels. This can be done with a call to...

stolpeo

**Is your feature request related to a problem? Please describe.** I started to remove (or replace by mehari) references to the HGNC table as requested in #1551. However, two references...

stolpeo

Create a consistent configuration cascade/design for existing configuration parameters

2

**Is your feature request related to a problem? Please describe.** Currently certain settings are set site wide, project wide or per user. This is often an issue, as in different...

xiamaz

female sex determination is correct, but called as error

3

**Describe the bug** As QC feature VarFish compare the sex of the ped file with the het. call ratio on chromosome X. Althoug males and females are cluster on the...

flokraft85

**Is your feature request related to a problem? Please describe.** The HGMD Pro link-out can be enabled in the configuration and configured with a custom URL, but this is never...

stolpeo

ClinVar database dump update

2

**Is your feature request related to a problem? Please describe.** We need latest ClinVar database dumps. It needs to be recorded on which version **Describe the solution you'd like** Get...

einicke

precomputed scores and spliceai not displayed in variant details

5

**Describe the bug** The precomputed scores and SpliceAI score that are shown in the result list are not shown in the variant details, only "prediction not available".

stolpeo

previous query settings might interfer with current settings

1

**Describe the bug** When I removed hgmd and dbnsp filter settings as requested in #739 I noticed that the settings are stuck to previous query settings and the only solution...

stolpeo

**Describe the bug** The IVG view on the variant details page for SV (GRCh38) shows the whole genome (chr1-22, X and Y) instead showing the region, where the SV is...

flokraft85