Torsten Seemann

icon indicating a website link https://tseemann.github.io/

icon company The University of Melbourne icon location Melbourne, AUSTRALIA icon location Bioinformatician, microbial genomics

Results 18 repositories owned by Torsten Seemann

mlst

174
Stars
42
Forks
Watchers

:id: Scan contig files against PubMLST typing schemes

verified publisher icon tseemann

PEAR

22
Stars
39
Forks
Watchers

Pair-End AssembeR

verified publisher icon tseemann

phastaf

29
Stars
4
Forks
Watchers

Identify phage regions in bacterial genomes for masking purposes

verified publisher icon tseemann

samclip

44
Stars
9
Forks
Watchers

Filter SAM file for soft and hard clipped alignments

verified publisher icon tseemann

seeka

28
Stars
4
Forks
Watchers

Get microbial sequence data easier and faster

verified publisher icon tseemann

sixess

23
Stars
2
Forks
Watchers

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

verified publisher icon tseemann

snp-dists

110
Stars
27
Forks
Watchers

Pairwise SNP distance matrix from a FASTA sequence alignment

verified publisher icon tseemann

cgmlst-dists

23
Stars
6
Forks
Watchers

🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables

verified publisher icon tseemann