Torsten Seemann

Due to university ActiveDirectory, students have usernames `$USER` like `STUDENT\janedoe`. Some systems set `TMPDIR=/tmp/$USER`. The system libraries you are using for temporary BLAST files use this variable. But it needs...

Messy error when no X11 connection

4

eg. when using MOSH instead of SSH ``` % Bandage QXcbConnection: Could not connect to display localhost:10.0 Aborted (core dumped) ```

On 0.5.6 binaries for Linux over X11 connection, the "Node" text boxes (jump to, or build graph around) don't accept text, typed or pasted.


Was wondering if you could add `-1` and `-2` options and run `pilon` after `racon` to further polish?

You provide a wrapper `miniasm_and_minipolish.sh` to do both steps. I was wondering if you could add option, or just run minimap2/miniasm automatically if no assembly is provided (or make it...

Shuffle rows: csvtk shuf /or/ csvtk sort -R

3

I want to randomly re-order the rows in my CSV file. Basically unix `shuf` or `sort -R` but for xSV data. The actual use case is to shuffle the data...

feature request: csv2html

2

### Prerequisites - [x] make sure you're are using the latest version by `csvtk version` - [x] read the [usage](http://bioinf.shenwei.me/csvtk/usage/) ### Describe your issue * [x] describe the problem *...

xlsx2csv - controlling DATE output format

6

I have used `csvtk xlsx2csv` a few times. It ususally outputs dates as `YYYY-MM-DD` but yesterday i got one in USA format `MM-DD-YY` Does XLSX store the date in a...

std::length_error / core dump when running with example.dot file

2

I created the example.dot specified in the README file: ``` % cat example.dot AATCGATCG 3 ATCGATCGT 33 TCGATCGTA 645 % ./bcalm input.dot Sorting m-mer counts 11 ttggttaatt 11 gacggaacga 11...