snakemake-pipeline topic
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snakemake-pipeline repositories
score-assemblies
23
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1
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Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
human_genomics_pipeline
28
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21
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A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
ont-assembly-snake
18
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2
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Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
grenepipe
79
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18
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A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.