pymol topic

P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

rdk

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

pymodproject

A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site

matteoferla

(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina

Valdes-Tresanco-MS

(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina

Valdes-Tresanco-MS

A Consensus Docking Plugin for PyMOL

paiardin

Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents

patonlab

molecular dynamics simulation and analysis. 分子动力学模拟和分析。

liyigerry

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

cbalbin-bio

A PyMOL plugin for visualizing vibrations in molecules and solids

smutao