alphafold topic

List alphafold repositories

alphafold

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Install alphafold on the local machine, get out of docker.

alphafold_pytorch

384
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An implementation of the DeepMind's AlphaFold based on PyTorch for research

Uni-Fold

348
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An open-source platform for developing protein models beyond AlphaFold.

ParallelFold

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Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

awesome-structural-bioinformatics

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Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

pymol-color-alphafold

49
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PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Revisiting-PLMs

55
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9
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Exploring Evolution-aware & free protein language models as protein function predictors

alphafold2-multiprocessing

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Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing

FMol

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A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.