alphafold topic
alphafold
Install alphafold on the local machine, get out of docker.
alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.
ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
awesome-structural-bioinformatics
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
pymol-color-alphafold
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
Revisiting-PLMs
Exploring Evolution-aware & free protein language models as protein function predictors
alphafold_singularity
Singularity recipe for AlphaFold
alphafold2-multiprocessing
Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
FMol
A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.