protein-sequence topic
proteinnet
Standardized data set for machine learning of protein structure
protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
DMPfold
De novo protein structure prediction using iteratively predicted structural constraints
proteinsolver
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
DeepFam
Deep learning based alignment-free method for protein family modeling and prediction
gcWGAN
Guided Conditional Wasserstein GAN for De Novo Protein Design
MolArt
MOLeculAR structure annoTator
ProtFlash
ProtFlash: A lightweight protein language model
propy3
A Python 3 version of the protein descriptor package propy
SaProt
[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet