Shen Lab at Texas A&M University
Shen Lab at Texas A&M University
GraphCL
[NeurIPS 2020] "Graph Contrastive Learning with Augmentations" by Yuning You, Tianlong Chen, Yongduo Sui, Ting Chen, Zhangyang Wang, Yang Shen
DeepAffinity
Protein-compound affinity prediction through unified RNN-CNN
SS-GCNs
[ICML 2020] "When Does Self-Supervision Help Graph Convolutional Networks?" by Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen
GraphCL_Automated
[ICML 2021] "Graph Contrastive Learning Automated" by Yuning You, Tianlong Chen, Yang Shen, Zhangyang Wang; [WSDM 2022] "Bringing Your Own View: Graph Contrastive Learning without Prefabricated D...
Drug-Combo-Generator
Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding
gcWGAN
Guided Conditional Wasserstein GAN for De Novo Protein Design
TALE
Transformer-based protein function Annotation with joint feature-Label Embedding
LOIS
[NeurIPS 2019] LOIS: Learning to Optimize In Swarms, guided by posterior estimation
GDA-SpecReg
[ICLR 2023] "Graph Domain Adaptation via Theory-Grounded Spectral Regularization" by Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen
LDM-3DG
[ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen