ome-zarr-converter topic

Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.

scalableminds

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

spatial-image

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

thewtex

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

czbiohub-sf

ome

Bio-Formats image file format to raw format converter

glencoesoftware

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

Euro-BioImaging