ngff-zarr

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Features

• Minimal dependencies
• Work with arbitrary Zarr store types
• Lazy, parallel, and web ready -- no local filesystem required
• Process extremely large datasets
• Multiple downscaling methods
• Supports Python>=3.8
• Implements version 0.4 of the OME-Zarr NGFF specification

Installation

To install the command line interface (CLI):

pip install 'ngff-zarr[cli]'

Documentation

More information an command line usage, the Python API, library features, and how to contribute can be found in our documentation.

See also

• ome-zarr-py
• multiscale-spatial-image

License

ngff-zarr is distributed under the terms of the MIT license.