ncbi topic

List ncbi repositories

datasets

317
Stars
38
Forks
Watchers

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

gget

933
Stars
74
Forks
Watchers

🧬 gget enables efficient querying of genomic reference databases

pypubmed

24
Stars
7
Forks
Watchers

Toolkits for NCBI Pubmed

taxdump_edit

17
Stars
2
Forks
Watchers

:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files

entrez-rs

17
Stars
3
Forks
Watchers

A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.

tostadas

26
Stars
7
Forks
Watchers

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

Pubmedsoso

17
Stars
1
Forks
Watchers

一个批量下载pubmed免费文献的python小工具

ATACFlow

15
Stars
10
Forks
Watchers

An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter