md-simulations topic

List md-simulations repositories

pyemma_tutorials

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How to analyze molecular dynamics data with PyEMMA

PyDHAMed

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Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations

covid

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MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store

seekr2

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Simulation-Enabled Estimation of Kinetic Rates - Version 2

restraintmaker

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Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a s...